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Ultimate Verse:
Gen:
Chocolate Milk by Minisinoo - Jean and Scott, Jean/Logan
https://www.fanfiction.net/s/393982/1/Chocolate-Milk-UltX
Jean deals with Scott’s defection, Jean POV issues #3-4 I believe this story had the honor of being the very first Ultimate X-Men fanfic story that was written and posted publicly, in May of 2001.
Showering Blind by Minisinoo - Jean and Scott
https://www.fanfiction.net/s/421581/1/Showering-Blind
Curiosity killed the Jean, or at least made her re-examine her own ethics. Ult-X Jean, Scott
Lumps by Minisinoo - Jean and Scott
https://www.fanfiction.net/s/605550/1/Lumps
Jean, secrets, fear . . . and friendship. ULT-X J/S friendship
Stormy Monday by Minisinoo - Ororo and Scott
http://web.archive.org/web/20080314063805/http://www.themedicinewheel.net/comic/stormymonday.html
"It was a dark and stormy night ..." A meeting and conversation at the fridge, S/O friendship.
Property by Dee - Ororo and Scott
http://www.viscerate.com/fanfic/property.html
An understanding found, a friendship forming. Snippets of conversation fitting in between Ultimate X-Men #1-2, and just after #6.
Necessary Care by Dee - Ororo and Scott
http://www.viscerate.com/fanfic/neccare.html
Being the field leader sometimes requires giving a little care. (During issue #7; sequel to "Property".)
Hanging Lights by Minisinoo - Jean and Scott, Team
https://www.fanfiction.net/s/470734/1/Hanging-Lights
Pretty much just what the title says -- snapshots of the annual decorating process, complete with purple lights. Slice-of-life holiday humorfic. (Ultimate X-Men, post issue #12; no spoilers)
Stormy Weather by Mara Greengrass - Team
https://www.fanfiction.net/s/962166/1/Stormy_Weather
Stuck inside during a snowstorm, the residents of the X-Mansion talk. (Ultimate X-Men)
Loners by Wyzeguy - Ultimate Spider-Man (Peter Parker) meets Cyclops
http://wyzeguy79.tripod.com/loners.html
Spidey encounters Sentinels early in his career, and has unexpected help from the X-men's leader.
Scott/Jean:
Listening In, Unwilling by Minisinoo - Jean/Scott
http://web.archive.org/web/20080312051944/http://www.themedicinewheel.net/comic/listeningin.html
(Weapon X) Jean overhears
I Guess It’s All Right by Minisinoo - Jean/Scott
(post #12) So what happens on the morning(s) after? ADULT c. 32,500 words Novella, link goes to a subpage
Redbird by Minisinoo by Jean/Scott
http://web.archive.org/web/20080312051944/http://www.themedicinewheel.net/comic/redbird.html
(post #16) Following the departure of Peter, Scott and Jean talk . . . among other things. ADULT
Hero Under Pressure by Mara Greengrass - Jean/Scott
https://www.fanfiction.net/s/589250/1/Hero_Under_Pressure
When Wraith is away, the guards of Weapon X will play.
Scott/Ororo:
Lightning Over Elk River by Minisinoo - Ororo/Scott
https://www.fanfiction.net/s/12358958/1/Lightning-Over-Elk-River
Storm and Cyclops are sent by Professor X to recover a potential new recruit: Dani Elk River. Action & character development, oodles of pathos. Discussion of ADULT topics, including sex and drugs. Drugs are not glorified. 40,000 words
Smile Back (Lightning Over Elk River 2) by Minisinoo - Ororo/Scott, Hank/Ororo
https://www.fanfiction.net/s/12359113/1/Smile-Back-Lightning-over-Elk-River-2
Follows Events in "Lightning Over Elk River." Alternating first person, Ororo and Scott, regarding the complication of Henry, among other things. Contains (a sensitive) discussion of controversial topics.
Shades of Grey (Lightning Over Elk River 3) by Minisinoo - Ororo/Scott, Hank/Ororo
https://www.fanfiction.net/s/12360818/1/Shades-of-Grey-Lightning-Over-Elk-River-3
After the Indian Mission, Ororo reflects on Jean and choices.
Pure and Simple by Dee - Ororo/Scott
http://www.viscerate.com/fanfic/pure1.html
http://www.viscerate.com/fanfic/pure2.html
It was just sex, pure and simple. Ororo POV, Scott/Ororo, covering the period of the first story arc.
Easy Answers by Dee - Ororo/Scott
http://www.viscerate.com/fanfic/easy.html
Scott, friends, lovers, and finding easy answers. During #8, after 'Pure and Simple’.
Confessions by Dee - Ororo/Scott
http://www.viscerate.com/fanfic/confess.html
Scott admits to impure thoughts. A 'Pure and Simple' interlude, after #10, written for Min's 'Scott-smut' challenge.
Tradition by Dee - Ororo/Scott
http://www.viscerate.com/fanfic/tradition.html
Very brief (and fluffy) Ororo thoughts at Christmas.
Scott/Other Female:
Eros On Trial by Minisinoo - Lee Forrester/Scott
http://web.archive.org/web/20080310052604/http://www.themedicinewheel.net/comic/erosontrial.html
Cyclops is showing an interest in a new woman, and she's not a mutant. But she might hold the keys to his family, and his past. What will his classmates -- and the professor -- make of Lee Forrester?
Slash:
Scott/Logan:
A Dish Best Served Raw by Kindkit - Logan/Scott
http://archiveofourown.org/works/16934
Scott wants an apology. A big one.
What It’s Like by Eiluned - Logan/Scott
http://archiveofourown.org/works/238204
Ever wonder what it's like?
Scott/Other Male:
Handbasket Detour: A Dangerous Man by Jane St. Clair and Te - Scott/Jean-Paul
https://archiveofourown.org/works/238589
International relations.The Cyclops X-Men Fanfiction Rec List!!! Comicverse
The Cyclops X-Men Fanfiction Rec List!!! Movieverse O3
The Cyclops X-Men Fanfiction Rec List!!! First Class Retcon Trilogy
The Cyclops X-Men Fanfiction Rec List!!! Cartoonverse Evolution
X-Men Fanfiction Archives